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    LOC4343174 P-loop NTPase domain-containing protein LPA1 homolog 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343174, updated on 16-Jul-2024

    Summary

    Gene symbol
    LOC4343174
    Gene description
    P-loop NTPase domain-containing protein LPA1 homolog 1
    Locus tag
    OSNPB_070466200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 15.1), flowers (RPKM 14.5) and 6 other tissues See more
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    Genomic context

    See LOC4343174 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (16677365..16683389)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (16512358..16520924)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357197 Neighboring gene GDSL esterase/lipase At4g10955 Neighboring gene uncharacterized LOC136357325 Neighboring gene ubiquitin-related modifier 1 homolog

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    P-loop NTPase domain-containing protein LPA1 homolog 1
    Names
    Os07g0466200
    P0404G11.125-1
    putative ATP/GTP nucleotide-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      16677365..16683389
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026957.2XP_025882742.1  P-loop NTPase domain-containing protein LPA1 homolog 1

      UniProtKB/TrEMBL
      A0A0P0X5N6, B9FX42, Q7EYM6
      Conserved Domains (1) summary
      PRK04220
      Location:102294
      PRK04220; 2-phosphoglycerate kinase; Provisional
    2. XM_015792272.3XP_015647758.1  P-loop NTPase domain-containing protein LPA1 homolog 1

      UniProtKB/TrEMBL
      A0A0P0X5N6, B9FX42, Q7EYM6
      Conserved Domains (1) summary
      PRK04220
      Location:102294
      PRK04220; 2-phosphoglycerate kinase; Provisional