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    LOC4345294 LRR receptor-like serine/threonine-protein kinase EFR [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345294, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4345294
    Gene description
    LRR receptor-like serine/threonine-protein kinase EFR
    Locus tag
    OSNPB_080331900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1224_G08.4
    Expression
    Biased expression in roots before flowering (RPKM 12.9), leaves after flowering (RPKM 4.2) and 3 other tissues See more
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    Genomic context

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    See LOC4345294 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (14749313..14752414)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (14673000..14679422)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351433 Neighboring gene uncharacterized LOC136351434 Neighboring gene uncharacterized LOC9268948 Neighboring gene uncharacterized LOC107281832 Neighboring gene uncharacterized LOC4345295

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LRR receptor-like serine/threonine-protein kinase EFR
    Names
    Os08g0331900
    P0474F07.36
    putative protein kinase Xa21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      14749313..14752414
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792639.3 → XP_015648125.1  LRR receptor-like serine/threonine-protein kinase EFR

      Conserved Domains (4) summary
      cd00116
      Location:167 → 298
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:167 → 190
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:48 → 89
      LRRNT_2; Leucine rich repeat N-terminal domain
      pfam13855
      Location:287 → 345
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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