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    LOC4347418 tonoplast dicarboxylate transporter [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347418, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4347418
    Gene description
    tonoplast dicarboxylate transporter
    Locus tag
    OSNPB_090484900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347418 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (23110339..23113727)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (18715291..18718865)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene induced stolen tip protein TUB8 Neighboring gene E3 ubiquitin-protein ligase UPL5 Neighboring gene pirin-like protein Neighboring gene zinc finger protein WIP2 Neighboring gene uncharacterized LOC4347421

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tonoplast dicarboxylate transporter
    Names
    Os09g0484900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      23110339..23113727
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757123.3 → XP_015612609.1  tonoplast dicarboxylate transporter

      UniProtKB/TrEMBL
      A0A0P0XPN1, A2Z2I9, B9G493, Q0J0T0
      Conserved Domains (1) summary
      cd01115
      Location:74 → 533
      SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...
    Nucleotide Protein
    Heading Accession and Version

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