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    LOC4327470 transcription initiation factor TFIID subunit 12b [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327470, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4327470
    Gene description
    transcription initiation factor TFIID subunit 12b
    Locus tag
    OSNPB_010846900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0005H10.8
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    Genomic context

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    See LOC4327470 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (37010813..37016372, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (36385638..36390627, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable methyltransferase PMT11 Neighboring gene ultraviolet-B receptor UVR8 Neighboring gene uncharacterized LOC4327471 Neighboring gene probable mannose-1-phosphate guanylyltransferase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables TBP-class protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in RNA polymerase II preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SLIK (SAGA-like) complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation factor TFIID subunit 12b
    Names
    Os01g0846900
    P0446B05.36
    TAF12b transcript X1
    TAF12b transcript X2
    TAF12b transcript X3
    TAF12b transcript X4
    transcription initiation factor IID (TFIID) subunit A-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      37010813..37016372 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305435.1 → XP_066161532.1  transcription initiation factor TFIID subunit 12b isoform X3

      UniProtKB/TrEMBL
      A2WWY6

    2. XM_066305438.1 → XP_066161535.1  transcription initiation factor TFIID subunit 12b isoform X4

      UniProtKB/TrEMBL
      A2WWY6

    3. XM_015762740.3 → XP_015618226.2  transcription initiation factor TFIID subunit 12b isoform X2

      UniProtKB/TrEMBL
      A2WWY6, Q0JHS1, Q5N796, Q5N9M4

    4. XM_015762748.3 → XP_015618234.2  transcription initiation factor TFIID subunit 12b isoform X2

      UniProtKB/TrEMBL
      A2WWY6, Q0JHS1, Q5N796, Q5N9M4

    5. XM_015762725.3 → XP_015618211.2  transcription initiation factor TFIID subunit 12b isoform X1

      UniProtKB/TrEMBL
      A2WWY6, A2ZZJ3

    6. XM_015762732.3 → XP_015618218.2  transcription initiation factor TFIID subunit 12b isoform X1

      UniProtKB/TrEMBL
      A2WWY6, A2ZZJ3
    Nucleotide Protein
    Heading Accession and Version

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