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    LOC4350524 probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350524, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4350524
    Gene description
    probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1
    Locus tag
    OSNPB_110484000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_33906
    Expression
    Ubiquitous expression in roots before flowering (RPKM 88.9), leaves before flowering (RPKM 86.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (18955845..18963123, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (17036985..17044164, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene protein LOWER TEMPERATURE 1 Neighboring gene uncharacterized LOC4350523 Neighboring gene pentatricopeptide repeat-containing protein At5g66520 Neighboring gene DNA replication licensing factor MCM2-like Neighboring gene bifunctional dihydrofolate reductase-thymidylate synthase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acireductone synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-methionine salvage from methylthioadenosine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1
    Names
    LOC_Os11g29370
    NP_001410309.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423380.1 → NP_001410309.1  probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1

      Status: VALIDATED

      Source sequence(s)
      AU181861, CB667974, CB667975, CF278527, CI575046
      UniProtKB/Swiss-Prot
      A0A0P0Y2G2, A6N0A6, B8BKI7, Q2R483

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      18955845..18963123 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2R483.1 GenPept UniProtKB/Swiss-Prot:Q2R483

    Gene LinkOut

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