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    LOC4336574 nudix hydrolase 8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336574, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336574
    Gene description
    nudix hydrolase 8
    Locus tag
    OSNPB_040547900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 102.4), roots after flowering (RPKM 70.0) and 6 other tissues See more
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    Genomic context

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    See LOC4336574 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (27928393..27931133)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (27423442..27426178)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor 6 Neighboring gene ethylene-responsive transcription factor ERF105 Neighboring gene deSI-like protein At4g17486 Neighboring gene disease resistance protein RPM1 Neighboring gene uncharacterized protein At3g06530

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP-ribose diphosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADH pyrophosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nudix hydrolase 8
    Names
    Os04g0547900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      27928393..27931133
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778088.2 → XP_015633574.1  nudix hydrolase 8

      UniProtKB/TrEMBL
      A2XW53, B9FGF6, Q01I29, Q0JB97
      Conserved Domains (2) summary
      cd04670
      Location:195 → 326
      Nudix_Hydrolase_12; Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly ...
      pfam18290
      Location:102 → 181
      Nudix_hydro; Nudix hydrolase domain
    Nucleotide Protein
    Heading Accession and Version

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