U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4339923 60S ribosomal protein L13-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339923, updated on 6-Jun-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4339923
    Gene description
    60S ribosomal protein L13-1
    Locus tag
    OSNPB_060115500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 168.1), flowers (RPKM 125.7) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4339923 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (867471..869885, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA-binding domain-containing protein 2-like Neighboring gene superoxide dismutase [Fe] 1, chloroplastic-like Neighboring gene Protein CYCLOPS Neighboring gene histone H3.v1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    60S ribosomal protein L13-1
    Names
    OSJNBa0019F11.16
    Os06g0115500
    P0541H01.38
    putative 60S ribosomal protein L13E

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421001.1 → NP_001407930.1  60S ribosomal protein L13-1

      Status: VALIDATED

      Source sequence(s)
      CB682542, CF290918, CI446912
      UniProtKB/TrEMBL
      A0A0P0WS58, A0A5S6RAV1, A2Y8K1, Q10HT7, Q8H665, Q9LWS2

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      867471..869885 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788890.2 → XP_015644376.1  60S ribosomal protein L13-1

      UniProtKB/TrEMBL
      Q9LWS2
      Conserved Domains (1) summary
      pfam01294
      Location:7 → 187
      Ribosomal_L13e; Ribosomal protein L13e

    2. XM_026026300.1 → XP_025882085.1  60S ribosomal protein L13-1

      UniProtKB/TrEMBL
      A0A0P0WS58, A0A5S6RAV1, A2Y8K1, Q10HT7, Q8H665, Q9LWS2
      Conserved Domains (1) summary
      pfam01294
      Location:7 → 187
      Ribosomal_L13e; Ribosomal protein L13e
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials