U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4334839 sucrose nonfermenting 4-like protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334839, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4334839
    Gene description
    sucrose nonfermenting 4-like protein
    Locus tag
    OSNPB_030856400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 25.1), flower buds (RPKM 24.4) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4334839 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (37103395..37110972)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (36124479..36131991)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent DNA helicase 2 subunit KU80-like Neighboring gene acyl carrier protein 3, chloroplastic Neighboring gene ribosome-binding factor PSRP1, chloroplastic Neighboring gene gibberellin 20 oxidase 1-like Neighboring gene uncharacterized LOC112938228

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    sucrose nonfermenting 4-like protein
    Names
    Os03g0856400

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      37103395..37110972
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775494.3 → XP_015630980.1  sucrose nonfermenting 4-like protein

      UniProtKB/TrEMBL
      A0A0P0W665, B8ANR8, B9F7Z6, Q84M80
      Conserved Domains (2) summary
      pfam16561
      Location:22 → 107
      AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase
      cl15354
      Location:169 → 317
      CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials