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    LOC4339477 uncharacterized LOC4339477 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339477, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339477
    Gene description
    uncharacterized LOC4339477
    Locus tag
    OSNPB_050542200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4339477 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (27031604..27035595, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (26913392..26917454, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL28z Neighboring gene small nucleolar RNA R24 Neighboring gene uncharacterized LOC4339476 Neighboring gene uncharacterized LOC107281117 Neighboring gene uncharacterized LOC9268161 Neighboring gene late embryogenesis abundant protein 19-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4339477
    Names
    Os05g0542200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      27031604..27035595 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784511.3 → XP_015639997.1  uncharacterized protein LOC4339477 isoform X2

      UniProtKB/TrEMBL
      B7EJU0, B9FLE5
      Conserved Domains (1) summary
      COG0596
      Location:16 → 313
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]

    2. XM_015784510.3 → XP_015639996.1  uncharacterized protein LOC4339477 isoform X1

      UniProtKB/TrEMBL
      B8AW77, Q0DGB7, Q5TKP0
      Conserved Domains (1) summary
      COG0596
      Location:16 → 313
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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