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    LOC4342105 serine/threonine-protein kinase STY46 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342105, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4342105
    Gene description
    serine/threonine-protein kinase STY46
    Locus tag
    OSNPB_060724900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    EDR1-like; P0548E04.7
    Expression
    Broad expression in roots before flowering (RPKM 11.0), flower buds (RPKM 8.3) and 6 other tissues See more
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    Genomic context

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    See LOC4342105 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (30817446..30823399)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene DDB1- and CUL4-associated factor 8-like Neighboring gene serine/arginine-rich splicing factor SR45a Neighboring gene serine/threonine-protein kinase ATR-like Neighboring gene transcription factor bHLH93 Neighboring gene thiosulfate sulfurtransferase 16, chloroplastic Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2-like Neighboring gene GDSL esterase/lipase At5g55050

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The rice Raf-like MAPKKK OsILA1 confers broad-spectrum resistance to bacterial blight by suppressing the OsMAPKK4-OsMAPK6 cascade. Chen J, et al. J Integr Plant Biol, 2021 Oct. PMID 34270159
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The rice Raf-like MAPKKK OsILA1 confers broad-spectrum resistance to bacterial blight by suppressing the OsMAPKK4-OsMAPK6 cascade.
      Title: The rice Raf-like MAPKKK OsILA1 confers broad-spectrum resistance to bacterial blight by suppressing the OsMAPKK4-OsMAPK6 cascade.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein kinase STY46
    Names
    Os06g0724900
    P0535F09.40

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421929.1 → NP_001408858.1  serine/threonine-protein kinase STY46

      Status: VALIDATED

      Source sequence(s)
      AK073747
      UniProtKB/TrEMBL
      B8B2K2, B9FQY9, Q5Z986

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      30817446..30823399
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788607.1 → XP_015644093.1  serine/threonine-protein kinase STY46

      UniProtKB/TrEMBL
      Q5Z986
      Conserved Domains (3) summary
      cd13999
      Location:291 → 534
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
      pfam07714
      Location:285 → 534
      Pkinase_Tyr; Protein tyrosine kinase
      cl09141
      Location:170 → 237
      ACT; ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme
    Nucleotide Protein
    Heading Accession and Version

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