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    LOC107275248 uncharacterized LOC107275248 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 107275248, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC107275248
    Gene description
    uncharacterized LOC107275248
    Locus tag
    OSNPB_020593400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 9.4), roots before flowering (RPKM 4.9) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (23458305..23459098, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (22975538..22976653, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene amine oxidase [copper-containing] zeta, peroxisomal-like Neighboring gene inorganic phosphate transporter 2-1, chloroplastic Neighboring gene plant intracellular Ras-group-related LRR protein 2-like Neighboring gene protein NBR1 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of mitotic cell cycle spindle assembly checkpoint IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of anaphase-promoting complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC107275248
    Names
    Os02g0593400
    anaphase-promoting complex subunit 15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      23458305..23459098 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771010.3 → XP_015626496.1  uncharacterized protein LOC107275248

      UniProtKB/TrEMBL
      A0A0P0VL69, A3A8K6, Q0DZX4
      Conserved Domains (1) summary
      pfam15243
      Location:3 → 94
      ANAPC15; Anaphase-promoting complex subunit 15
    Nucleotide Protein
    Heading Accession and Version

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