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    LOC4324378 N6-adenosine-methyltransferase non-catalytic subunit MTB [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324378, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4324378
    Gene description
    N6-adenosine-methyltransferase non-catalytic subunit MTB
    Locus tag
    OSNPB_010267100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 13.5), roots after flowering (RPKM 12.6) and 6 other tissues See more
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    Genomic context

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    See LOC4324378 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (9172609..9178567)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (9159611..9165687)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene peroxiredoxin-2F, mitochondrial-like Neighboring gene vacuolar lysine transporter YPQ1 Neighboring gene 26S proteasome non-ATPase regulatory subunit 14 homolog Neighboring gene putative serpin-Z12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA N6-methyladenosine methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    N6-adenosine-methyltransferase non-catalytic subunit MTB
    Names
    Os01g0267100
    methyltransferase-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      9172609..9178567
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311080.1 → XP_066167177.1  N6-adenosine-methyltransferase non-catalytic subunit MTB isoform X1

      UniProtKB/TrEMBL
      A0A0P0V0R5, Q0JNT2

    2. XM_066311081.1 → XP_066167178.1  N6-adenosine-methyltransferase non-catalytic subunit MTB isoform X2

      UniProtKB/TrEMBL
      A2WN86, A2ZRK8

    3. XM_066311076.1 → XP_066167173.1  N6-adenosine-methyltransferase non-catalytic subunit MTB isoform X1

      UniProtKB/TrEMBL
      A0A0P0V0R5, Q0JNT2

    4. XM_066311077.1 → XP_066167174.1  N6-adenosine-methyltransferase non-catalytic subunit MTB isoform X2

      UniProtKB/TrEMBL
      A2WN86, A2ZRK8
    Nucleotide Protein
    Heading Accession and Version

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