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    LOC4339812 UDP-glucose 4-epimerase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339812, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4339812
    Gene description
    UDP-glucose 4-epimerase 1-like
    Locus tag
    OSNPB_050595100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    UGE-1; OsUGE-1; OsJ_19776
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    Genomic context

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    See LOC4339812 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (29818656..29822539)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (29631963..29635768)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory subunit RPN13 Neighboring gene sm-like protein LSM8 Neighboring gene pathogenesis-related protein 1 Neighboring gene pathogenesis-related protein PR-1 Neighboring gene uncharacterized LOC4339814 Neighboring gene nucleoside diphosphate kinase 3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-glucose 4-epimerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in galactose catabolic process via UDP-galactose IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UDP-glucose 4-epimerase 1
    Names
    LOC_Os05g51670
    OSJNBa0030I14.9
    UDP-galactose 4-epimerase 1
    NP_001407860.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420931.1 → NP_001407860.1  UDP-glucose 4-epimerase 1

      Status: VALIDATED

      Source sequence(s)
      CB681121, CF276199, CF310802, CF313990
      UniProtKB/Swiss-Prot
      Q8LNZ3
      UniProtKB/TrEMBL
      A2Y861

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      29818656..29822539
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LNZ3.1 GenPept UniProtKB/Swiss-Prot:Q8LNZ3

    Gene LinkOut

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