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    LOC4345686 omega-6 fatty acid desaturase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345686, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4345686
    Gene description
    omega-6 fatty acid desaturase, chloroplastic
    Locus tag
    OSNPB_080440900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4345686 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (21589359..21594358, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21450952..21456006, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene stromal cell-derived factor 2-like protein Neighboring gene NADP-dependent glyceraldehyde-3-phosphate dehydrogenase Neighboring gene CBL-interacting protein kinase 6-like Neighboring gene uncharacterized LOC107281856

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables omega-6 fatty acid desaturase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    omega-6 fatty acid desaturase, chloroplastic
    Names
    Os08g0440900
    P0524F03.46
    P0528B09.19
    putative Omega-6 fatty acid desaturase, chloroplast

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      21589359..21594358 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794767.3 → XP_015650253.1  omega-6 fatty acid desaturase, chloroplastic

      UniProtKB/TrEMBL
      B8BB37, B9G154, Q6Z9G4
      Conserved Domains (1) summary
      PLN02598
      Location:65 → 454
      PLN02598; omega-6 fatty acid desaturase
    Nucleotide Protein
    Heading Accession and Version

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