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    LOC4328692 uncharacterized LOC4328692 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328692, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328692
    Gene description
    uncharacterized LOC4328692
    Locus tag
    OSNPB_020208900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ziga2; OJ1003_F05.38-1; OJ1003_F05.38-2; OJ1006_A02.21-1; OJ1006_A02.21-2
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    Genomic context

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    See LOC4328692 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (6133073..6141656)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (6110085..6118710)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328690 Neighboring gene F-box/kelch-repeat protein At1g80440 Neighboring gene putative coatomer subunit beta'-3 Neighboring gene coatomer subunit beta'-2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development. Ye R, et al. Plant J, 2004 Apr. PMID 15078336
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328692
    Names
    Os02g0208900
    Rev interacting-like protein-like
    ZIGA2 protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      6133073..6141656
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771072.3 → XP_015626558.1  uncharacterized protein LOC4328692 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VGB1, B8ADW7, B9F3Y9, Q6H8D8
      Conserved Domains (1) summary
      PLN03131
      Location:1 → 521
      PLN03131; hypothetical protein; Provisional

    2. XM_015771073.3 → XP_015626559.1  uncharacterized protein LOC4328692 isoform X2

      UniProtKB/TrEMBL
      B8ADW7
      Conserved Domains (1) summary
      PLN03131
      Location:1 → 521
      PLN03131; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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