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    LOC4325072 soluble inorganic pyrophosphatase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325072, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325072
    Gene description
    soluble inorganic pyrophosphatase
    Locus tag
    OSNPB_010866500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in mature seeds (RPKM 224.7), leaves before flowering (RPKM 24.6) and 1 other tissue See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38149910..38153498, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37522229..37524182, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene histone H3.2 Neighboring gene VAMP-like protein YKT61 Neighboring gene fructose-1,6-bisphosphatase, cytosolic Neighboring gene protein BOLA2 Neighboring gene sm-like protein LSM3A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inorganic diphosphate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphate-containing compound metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    soluble inorganic pyrophosphatase
    Names
    Os01g0866500
    P0505D12.37
    putative soluble inorganic pyrophosphatase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38149910..38153498 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785997.3 → XP_015641483.1  soluble inorganic pyrophosphatase

      UniProtKB/TrEMBL
      A0A0P0VAU7, A2WXB3, A2ZZX7, Q5N9F4
      Conserved Domains (1) summary
      PLN02373
      Location:26 → 209
      PLN02373; soluble inorganic pyrophosphatase
    Nucleotide Protein
    Heading Accession and Version

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