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    LOC4342218 protein LONGIFOLIA 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342218, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4342218
    Gene description
    protein LONGIFOLIA 1
    Locus tag
    OSNPB_070109400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1567_G09.117
    Expression
    Biased expression in flowers (RPKM 14.0), flower buds (RPKM 7.2) and 3 other tissues See more
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    Genomic context

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    See LOC4342218 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (515656..521953)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene uncharacterized LOC107277120 Neighboring gene small nucleolar RNA R12 Neighboring gene 60S ribosomal protein L13a-2 Neighboring gene protein LEO1 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of monopolar cell growth IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein LONGIFOLIA 1
    Names
    Os07g0109400
    P0585H11.132

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      515656..521953
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791334.2 → XP_015646820.1  protein LONGIFOLIA 1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0X1Q1, A2YHF8, A3BFV6, Q7XIU5
      Conserved Domains (1) summary
      pfam14309
      Location:890 → 1066
      DUF4378; Domain of unknown function (DUF4378)

    2. XM_026027031.1 → XP_025882816.1  protein LONGIFOLIA 1 isoform X2

      Conserved Domains (1) summary
      pfam14309
      Location:884 → 1059
      DUF4378; Domain of unknown function (DUF4378)
    Nucleotide Protein
    Heading Accession and Version

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