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    LOC4340945 amine oxidase [copper-containing] alpha 3, peroxisomal [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340945, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC4340945
    Gene description
    amine oxidase [copper-containing] alpha 3, peroxisomal
    Locus tag
    OSNPB_060338200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 8.5), flowers (RPKM 7.4) and 5 other tissues See more
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    Genomic context

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    See LOC4340945 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (13661286..13669875)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (13476492..13485174)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357124 Neighboring gene protein MAIN-LIKE 1-like Neighboring gene amine oxidase [copper-containing] alpha 2, peroxisomal Neighboring gene uncharacterized LOC4340947

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables primary methylamine oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables quinone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amine oxidase [copper-containing] alpha 3, peroxisomal
    Names
    Os06g0338200
    P0427E01.36
    primary amine oxidase 2
    putative copper amine oxidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      13661286..13669875
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785593.3 → XP_015641079.1  amine oxidase [copper-containing] alpha 3, peroxisomal isoform X1

      UniProtKB/TrEMBL
      A0A0P0WW52, B8B1E0, Q5Z6D3
      Conserved Domains (1) summary
      PLN02566
      Location:28 → 680
      PLN02566; amine oxidase (copper-containing)

    2. XM_015785594.3 → XP_015641080.1  amine oxidase [copper-containing] alpha 3, peroxisomal isoform X2

      UniProtKB/TrEMBL
      B8B1E0
      Conserved Domains (1) summary
      PLN02566
      Location:28 → 678
      PLN02566; amine oxidase (copper-containing)
    Nucleotide Protein
    Heading Accession and Version

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