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    LOC4337915 G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337915, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4337915
    Gene description
    G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130
    Locus tag
    OSNPB_050165900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337915 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (3896379..3899875, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (3878279..3881120, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337912 Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene uncharacterized LOC107280905 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in recognition of pollen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130
    Names
    Os05g0165900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      3896379..3899875 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784469.3 → XP_015639955.1  G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130

      UniProtKB/TrEMBL
      B9GE14, Q0DKG2, Q60D78
      Conserved Domains (6) summary
      smart00108
      Location:34 → 163
      B_lectin; Bulb-type mannose-specific lectin
      cd14066
      Location:517 → 786
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00069
      Location:512 → 781
      Pkinase; Protein kinase domain
      pfam00954
      Location:241 → 337
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:83 → 191
      B_lectin; D-mannose binding lectin
      pfam08276
      Location:362 → 422
      PAN_2; PAN-like domain
    Nucleotide Protein
    Heading Accession and Version

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