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    LOC4337225 probable glucuronosyltransferase Os04g0650300 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337225, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337225
    Gene description
    probable glucuronosyltransferase Os04g0650300
    Locus tag
    OSNPB_040650300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GT43I
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    Genomic context

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    See LOC4337225 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (33652592..33655734, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33137073..33140322, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene oryzain alpha chain-like Neighboring gene GDSL esterase/lipase At5g03610 Neighboring gene flavonol 3-O-glucosyltransferase UGT89B1-like Neighboring gene protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic Neighboring gene small RNA degrading nuclease 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional roles of rice glycosyltransferase family GT43 in xylan biosynthesis. Lee C, et al. Plant Signal Behav, 2014. PMID 24525904, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables xylosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucuronoxylan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type secondary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable glucuronosyltransferase Os04g0650300
    Names
    GT43 family glycosyltransferase I
    Os04g0650300
    Os04g0650366

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      33652592..33655734 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781495.3 → XP_015636981.1  probable glucuronosyltransferase Os04g0650300

      UniProtKB/Swiss-Prot
      B9FCV3, Q0J9I4, Q7XMQ1
      UniProtKB/TrEMBL
      A0A023NE25, B8AVK4
      Conserved Domains (1) summary
      cl11394
      Location:170 → 402
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    Nucleotide Protein
    Heading Accession and Version

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