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    LOC4341111 probable indole-3-acetic acid-amido synthetase GH3.7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341111, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4341111
    Gene description
    probable indole-3-acetic acid-amido synthetase GH3.7
    Locus tag
    OSNPB_060499500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GH3.7; OsGH3-7
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    Genomic context

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    See LOC4341111 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (18436316..18440073, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (17586904..17590694, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g20090 Neighboring gene disease resistance protein RPM1-like Neighboring gene uncharacterized LOC107281420 Neighboring gene dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acid-amino acid ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable indole-3-acetic acid-amido synthetase GH3.7
    Names
    Auxin-responsive GH3-like protein 7
    LOC_Os06g30440
    P0012H03.1-1
    P0012H03.1-2
    P0596H06.21-1
    P0596H06.21-2
    putative auxin-responsive GH3
    NP_001389740.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402811.1 → NP_001389740.1  probable indole-3-acetic acid-amido synthetase GH3.7

      Status: VALIDATED

      Source sequence(s)
      AK099376, CI310657, CI316805, CI622223
      UniProtKB/Swiss-Prot
      Q0DC05, Q654M1, Q654M2
      UniProtKB/TrEMBL
      B8B2U6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      18436316..18440073 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q654M1.2 GenPept UniProtKB/Swiss-Prot:Q654M1

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