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    LOC9272260 uncharacterized LOC9272260 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272260, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC9272260
    Gene description
    uncharacterized LOC9272260
    Locus tag
    OSNPB_110538400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9272260 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (21582569..21585271)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (19635036..19637955)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene respiratory burst oxidase homolog protein B Neighboring gene uncharacterized LOC107275608 Neighboring gene F-box protein At4g22280-like Neighboring gene uncharacterized LOC112936997

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC9272260
    Names
    F-box domain-containing protein
    Os11g0538400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      21582569..21585271
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021194.2 → XP_025876979.1  uncharacterized protein LOC9272260

      UniProtKB/TrEMBL
      B9GB20, C7J9A6, Q2R344
      Conserved Domains (4) summary
      sd00032
      Location:269 → 290
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:100 → 137
      F-box; F-box domain
      cl10013
      Location:1 → 32
      Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
      cl26765
      Location:578 → 618
      FBD; FBD

    2. XM_066305169.1 → XP_066161266.1  uncharacterized protein LOC9272260

      UniProtKB/TrEMBL
      B9GB20, C7J9A6, Q2R344
    Nucleotide Protein
    Heading Accession and Version

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