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    LOC4336047 ATP-dependent RNA helicase SUV3L, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336047, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4336047
    Gene description
    ATP-dependent RNA helicase SUV3L, mitochondrial-like
    Locus tag
    OSNPB_040459800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsSUV3L; OsJ_15051
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    Genomic context

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    See LOC4336047 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (23442040..23446099, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22947874..22951884, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene ran guanine nucleotide release factor Neighboring gene NAP1-related protein 1-like Neighboring gene protease Do-like 8, chloroplastic Neighboring gene amino acid transporter AVT1I-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydrolase activity, acting on acid anhydrides IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondrial RNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial degradosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aTP-dependent RNA helicase SUV3L, mitochondrial
    Names
    ATP-dependent RNA helicase SUV3L, mitochondrial
    OSJNBa0036B21.27
    OSJNBa0072F16.4
    Os04g0459800
    Protein SUPPRESSOR OF VAR 3-like
    NP_001406324.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419395.1 → NP_001406324.1  aTP-dependent RNA helicase SUV3L, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      AK073573, AK105401, AU065529, AU161106, CI196329, CI303442
      UniProtKB/Swiss-Prot
      A0A0P0WAY9, B9FFJ0, Q01IJ3, Q0JCN6, Q7FAT2, Q7X745

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      23442040..23446099 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7X745.2 GenPept UniProtKB/Swiss-Prot:Q7X745

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials