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    LOC9266378 secretory carrier-associated membrane protein 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266378, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9266378
    Gene description
    secretory carrier-associated membrane protein 5-like
    Locus tag
    OSNPB_020697800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SCAMP5; OsJ_007763; P0459B01.9
    Expression
    Ubiquitous expression in flowers (RPKM 56.2), leaves after flowering (RPKM 26.9) and 6 other tissues See more
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    Genomic context

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    See LOC9266378 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (29186523..29190211)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (28696658..28700346)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330409 Neighboring gene uncharacterized LOC4330410 Neighboring gene phosphoribulokinase, chloroplastic Neighboring gene uncharacterized LOC4330414 Neighboring gene 18S ribosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in recycling endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    secretory carrier-associated membrane protein 5
    Names
    LOC_Os02g47010
    Secretory carrier membrane protein 5
    putative secretory carrier membrane protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428228.1 → NP_001415157.1  secretory carrier-associated membrane protein 5

      Status: VALIDATED

      Source sequence(s)
      AK106197, AU164774
      UniProtKB/Swiss-Prot
      A3AAE1, B7EZ37, Q6Z8F5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      29186523..29190211
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Z8F5.1 GenPept UniProtKB/Swiss-Prot:Q6Z8F5

    Gene LinkOut

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