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    LOC4346410 CBS domain-containing protein CBSX1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346410, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346410
    Gene description
    CBS domain-containing protein CBSX1, chloroplastic
    Locus tag
    OSNPB_090115500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1310_F05.16
    Expression
    Broad expression in leaves before flowering (RPKM 417.5), roots after flowering (RPKM 330.0) and 4 other tissues See more
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    Genomic context

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    See LOC4346410 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (5241197..5244804, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (1221120..1224817, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9270469 Neighboring gene polyadenylate-binding protein 2 Neighboring gene PI-PLC X domain-containing protein At5g67130 Neighboring gene uncharacterized LOC112936392

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    CBS domain-containing protein CBSX1, chloroplastic
    Names
    CBS domain containing protein-like
    Os09g0115500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      5241197..5244804 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757188.3 → XP_015612674.1  CBS domain-containing protein CBSX1, chloroplastic

      UniProtKB/TrEMBL
      B8BCY3, B9G253, Q6YYV0
      Conserved Domains (1) summary
      cl15354
      Location:72 → 215
      CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
    Nucleotide Protein
    Heading Accession and Version

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