LOC4337415 protochlorophyllide reductase A, chloroplastic-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4337415
Gene description: protochlorophyllide reductase A, chloroplastic-like
Locus tag: OSNPB_040678700
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: PORA; OsJ_16634
Expression: Broad expression in flowers (RPKM 56.8), leaves before flowering (RPKM 42.5) and 4 other tissues See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 4

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	4	NC_029259.1 (34663044..34664560)

Chromosome 4 - NC_029259.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protochlorophyllide reductase activity	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: protochlorophyllide reductase A, chloroplastic

Names: LOC_Os04g58200; NADPH-protochlorophyllide oxidoreductase A; OSJNBb0017I01.1; PCR A; POR A

XP_015633866.1

EC 1.3.1.33

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001402458.1 → NP_001389387.1 protochlorophyllide reductase A, chloroplastic

Status: VALIDATED

Source sequence(s)

AK065236, CI003770, CI004855, CI292026

UniProtKB/Swiss-Prot

A0A0P0WGD3, Q7XKF3

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029259.1 Reference IRGSP-1.0 Primary Assembly

Range

34663044..34664560

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015778380.2 → XP_015633866.1 protochlorophyllide reductase A, chloroplastic

UniProtKB/Swiss-Prot

Q7XKF3

Conserved Domains (1) summary

PLN00015
Location:77 → 385

PLN00015; protochlorophyllide reductase