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    LOC4339898 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339898, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4339898
    Gene description
    5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2
    Locus tag
    OSNPB_060112200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 41.5), roots before flowering (RPKM 41.2) and 6 other tissues See more
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    Genomic context

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    See LOC4339898 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (848984..851886)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (692716..695691)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene cellulose synthase-like protein D2 Neighboring gene pentatricopeptide repeat-containing protein At1g11290, chloroplastic Neighboring gene bark storage protein A Neighboring gene B3 domain-containing protein Os06g0112300-like Neighboring gene binding partner of ACD11 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methylthioadenosine nucleosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-methionine salvage from methylthioadenosine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleoside metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2
    Names
    Os06g0112200
    P0029D06.24
    methylthioadenosine/S-adenosyl homocysteine nucleosidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420994.1 → NP_001407923.1  5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2

      Status: VALIDATED

      Source sequence(s)
      AB110165, AK066172
      UniProtKB/TrEMBL
      A0A0P0WRY8, A3B7P5, Q7XXS8, Q8W162, Q9LHZ0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      848984..851886
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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