U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC9272170 probable ubiquitin-conjugating enzyme E2 25 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272170, updated on 16-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC9272170
    Gene description
    probable ubiquitin-conjugating enzyme E2 25
    Locus tag
    OSNPB_010229900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 1.6), flower buds (RPKM 1.6) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC9272170 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (7208009..7225243)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (7196919..7214293)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351084 Neighboring gene putative E3 ubiquitin-protein ligase LIN Neighboring gene bark storage protein A-like Neighboring gene uncharacterized LOC136354928 Neighboring gene transcription factor bHLH68 Neighboring gene uncharacterized LOC9269785

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable ubiquitin-conjugating enzyme E2 25
    Names
    Os01g0229900
    P0485D09.17-1
    ubiquitin-conjugating enzyme -like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      7208009..7225243
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766746.3 → XP_015622232.1  probable ubiquitin-conjugating enzyme E2 25 isoform X3

      UniProtKB/TrEMBL
      A0A0P0V082, Q5NB30
      Conserved Domains (1) summary
      cl00154
      Location:162 → 220
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    2. XM_026024140.2 → XP_025879925.1  probable ubiquitin-conjugating enzyme E2 25 isoform X4

      Conserved Domains (1) summary
      cl00154
      Location:153 → 211
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    3. XM_015766739.3 → XP_015622225.1  probable ubiquitin-conjugating enzyme E2 25 isoform X1

      UniProtKB/TrEMBL
      B7EAV1, Q10F67
      Conserved Domains (1) summary
      cl00154
      Location:176 → 234
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    4. XM_026024138.2 → XP_025879923.1  probable ubiquitin-conjugating enzyme E2 25 isoform X2

      UniProtKB/TrEMBL
      Q10F67
      Conserved Domains (1) summary
      cl00154
      Location:167 → 225
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    RNA

    1. XR_010742457.1 RNA Sequence

    2. XR_010742448.1 RNA Sequence

    3. XR_010742450.1 RNA Sequence

    4. XR_010742449.1 RNA Sequence

    5. XR_010742459.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials