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    LOC4330971 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330971, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4330971
    Gene description
    probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
    Locus tag
    OSNPB_020790500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1046_F07.17-1
    Expression
    Broad expression in roots before flowering (RPKM 110.5), roots after flowering (RPKM 38.2) and 6 other tissues See more
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    Genomic context

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    See LOC4330971 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (34065443..34069268)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33569238..33573166)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein CYPRO4 Neighboring gene uncharacterized LOC4330970 Neighboring gene uncharacterized LOC136355346 Neighboring gene RING-H2 finger protein ATL13 Neighboring gene uncharacterized LOC136355347

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables trehalose-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in trehalose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in trehalose metabolism in response to stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
    Names
    Os02g0790500
    putative alpha,alpha-trehalose-phosphate synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      34065443..34069268
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770296.3 → XP_015625782.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

      UniProtKB/TrEMBL
      A2XAF4, A3AC56, H6ST17, Q6KAF3
      Conserved Domains (1) summary
      PLN02205
      Location:1 → 832
      PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
    Nucleotide Protein
    Heading Accession and Version

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