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    LOC4326462 uncharacterized LOC4326462 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326462, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326462
    Gene description
    uncharacterized LOC4326462
    Locus tag
    OSNPB_010101600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0455C04.5
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    Genomic context

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    See LOC4326462 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (77258..84171)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (72780..79768)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At2g01510 Neighboring gene probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 Neighboring gene uncharacterized LOC4326461 Neighboring gene chaperone protein dnaJ 20, chloroplastic Neighboring gene uncharacterized LOC4326464 Neighboring gene uncharacterized LOC107278092

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4326462
    Names
    Os01g0101600
    P0402A09.11
    P0672D08.22
    nuclear protein -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      77258..84171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761674.3 → XP_015617160.1  uncharacterized protein LOC4326462

      UniProtKB/TrEMBL
      A2ZN89, Q0JRH1, Q655M5, Q7F2F5
      Conserved Domains (3) summary
      pfam00630
      Location:83 → 181
      Filamin; Filamin/ABP280 repeat
      cd00590
      Location:360 → 425
      RRM_SF; RNA recognition motif (RRM) superfamily
      NF033845
      Location:684 → 909
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB

    RNA

    1. XR_001541416.3 RNA Sequence

    2. XR_001541417.3 RNA Sequence

    3. XR_003243788.2 RNA Sequence

    4. XR_001541419.3 RNA Sequence

    5. XR_001541429.3 RNA Sequence

    6. XR_001541435.3 RNA Sequence

    7. XR_001541436.3 RNA Sequence

    8. XR_001541437.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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