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    LOC4334796 uncharacterized LOC4334796 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334796, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4334796
    Gene description
    uncharacterized LOC4334796
    Locus tag
    OSNPB_030850700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 29.5), roots after flowering (RPKM 22.9) and 4 other tissues See more
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    Genomic context

    See LOC4334796 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36788712..36793664, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35809983..35814755, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277504 Neighboring gene uncharacterized LOC107280214 Neighboring gene uncharacterized LOC4334795 Neighboring gene uncharacterized protein At4g14100 Neighboring gene chemocyanin

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC4334796
    Names
    Os03g0850700
    phosphatidylinositol transfer protein 3
    random slug protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      36788712..36793664 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772781.3XP_015628267.1  uncharacterized protein LOC4334796

      UniProtKB/TrEMBL
      Q0DLR6, Q851Z2
      Conserved Domains (2) summary
      smart00516
      Location:89245
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
      smart01100
      Location:2267
      CRAL_TRIO_N; CRAL/TRIO, N-terminal domain