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    LOC4347588 formin-like protein 15 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347588, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4347588
    Gene description
    formin-like protein 15
    Locus tag
    OSNPB_090517600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FH15; OsFH15
    Expression
    Broad expression in mature seeds (RPKM 6.5), flower buds (RPKM 1.8) and 4 other tissues See more
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    Genomic context

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    See LOC4347588 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24591116..24594410)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (20179620..20183024)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein Pik-2-like Neighboring gene disease resistance protein RPM1 Neighboring gene acyl-coenzyme A thioesterase 9, mitochondrial Neighboring gene putative F-box/kelch-repeat protein At1g12870

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsFH15, a class I formin, interacts with microfilaments and microtubules to regulate grain size via affecting cell expansion in rice. Sun T, et al. Sci Rep, 2017 Jul 26. PMID 28747699, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These results demonstrated that OsFH15 played an important role in grain-size control by affecting cell expansion through regulating actin filaments and microtubules.
      Title: OsFH15, a class I formin, interacts with microfilaments and microtubules to regulate grain size via affecting cell expansion in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in actin nucleation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    formin-like protein 15
    Names
    LOC_Os09g34180
    OSJNBb0034B12.29
    diaphanous protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422819.1 → NP_001409748.1  formin-like protein 15 precursor

      Status: VALIDATED

      Source sequence(s)
      AK101828, CI610475
      UniProtKB/Swiss-Prot
      B7ESA3, Q69MT2
      UniProtKB/TrEMBL
      A2Z354

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      24591116..24594410
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q69MT2.1 GenPept UniProtKB/Swiss-Prot:Q69MT2

    Gene LinkOut

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