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    LOC4334954 ARF guanine-nucleotide exchange factor GNL2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334954, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4334954
    Gene description
    ARF guanine-nucleotide exchange factor GNL2
    Locus tag
    OSNPB_040117300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 4.3) and flowers (RPKM 3.9) See more
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    Genomic context

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    See LOC4334954 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (1021564..1026382, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene paramyosin Neighboring gene small nucleolar RNA snoR103 Neighboring gene small nucleolar RNA snoR103 Neighboring gene putative potassium channel KAT5 Neighboring gene tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of ARF protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ARF guanine-nucleotide exchange factor GNL2
    Names
    Os04g0117300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      1021564..1026382 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779679.2 → XP_015635165.1  ARF guanine-nucleotide exchange factor GNL2

      UniProtKB/TrEMBL
      Q01MV6, Q7XT11
      Conserved Domains (2) summary
      PLN03076
      Location:267 → 965
      PLN03076; ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
      pfam01369
      Location:519 → 698
      Sec7; Sec7 domain
    Nucleotide Protein
    Heading Accession and Version

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