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    LOC4349269 protein STRICTOSIDINE SYNTHASE-LIKE 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349269, updated on 17-Jul-2024

    Summary

    Gene symbol
    LOC4349269
    Gene description
    protein STRICTOSIDINE SYNTHASE-LIKE 5
    Locus tag
    OSNPB_100543500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

    See LOC4349269 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (21916475..21918821)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21224291..21226900)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene chitinase 8-like Neighboring gene chitinase 8-like Neighboring gene homeobox-leucine zipper protein HOX1-like Neighboring gene glutathione S-transferase F10

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables strictosidine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    protein STRICTOSIDINE SYNTHASE-LIKE 5
    Names
    Os10g0543500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      21916475..21918821
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757236.3XP_015612722.1  protein STRICTOSIDINE SYNTHASE-LIKE 5

      UniProtKB/TrEMBL
      A0A5S6RDE8, A0A9K3Y7B4, A3C6Z6, Q7XCK3, Q9FWE6
      Conserved Domains (2) summary
      COG3386
      Location:55293
      YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
      cl22863
      Location:155241
      Str_synth; Strictosidine synthase