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    LOC4347359 transcription factor BIM2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347359, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347359
    Gene description
    transcription factor BIM2
    Locus tag
    OSNPB_090475400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 28.1), flowers (RPKM 23.7) and 6 other tissues See more
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    Genomic context

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    See LOC4347359 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (22591156..22598421)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (18207605..18214973)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-kinase gamma 5 Neighboring gene uncharacterized LOC136351721 Neighboring gene rhamnogalacturonan I rhamnosyltransferase 1 Neighboring gene uncharacterized LOC4347361

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor BIM2; transcription factor BIM3
    Names
    OSJNBa0026C08.39-1
    Os09g0475400
    P0556A05.2-1
    bHLH protein family-like
    bHLH transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      22591156..22598421
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757038.3 → XP_015612524.1  transcription factor BIM3 isoform X1

      UniProtKB/TrEMBL
      B8BCR2, Q0J0Z2, Q651Z4, Q69JI7
      Conserved Domains (1) summary
      cd11453
      Location:216 → 291
      bHLH_AtBIM_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BES1-interacting Myc-like proteins (BIMs) and similar proteins

    2. XM_015757039.3 → XP_015612525.1  transcription factor BIM2 isoform X2

      UniProtKB/TrEMBL
      B8BCR2
      Conserved Domains (1) summary
      pfam00010
      Location:135 → 184
      HLH; Helix-loop-helix DNA-binding domain

    RNA

    1. XR_010735022.1 RNA Sequence

    2. XR_010735023.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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