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    LOC4345857 uncharacterized LOC4345857 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345857, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4345857
    Gene description
    uncharacterized LOC4345857
    Locus tag
    OSNPB_080482100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1111_H02.6
    Expression
    Ubiquitous expression in roots after flowering (RPKM 28.1), leaves before flowering (RPKM 22.8) and 6 other tissues See more
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    Genomic context

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    See LOC4345857 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (23833999..23844387)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene dicarboxylate transporter 2.1, chloroplastic Neighboring gene probable bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic Neighboring gene arabinogalactan protein 1-like Neighboring gene small nucleolar RNA snoR113

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in intracellular monoatomic cation homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345857
    Names
    OSJNBb0092C08.35
    Os08g0482100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      23833999..23844387
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794933.2 → XP_015650419.1  uncharacterized protein LOC4345857 isoform X1

      UniProtKB/TrEMBL
      B9G1G4
      Conserved Domains (1) summary
      pfam07766
      Location:880 → 969
      LETM1; LETM1-like protein

    2. XM_015794934.2 → XP_015650420.1  uncharacterized protein LOC4345857 isoform X2

      UniProtKB/TrEMBL
      B9G1G4
      Conserved Domains (1) summary
      pfam07766
      Location:676 → 765
      LETM1; LETM1-like protein

    3. XM_015794935.2 → XP_015650421.1  uncharacterized protein LOC4345857 isoform X3

      UniProtKB/TrEMBL
      A0A0P0XGW2, Q0J4Y4, Q6Z233
      Conserved Domains (1) summary
      pfam07766
      Location:796 → 907
      LETM1; LETM1-like protein
    Nucleotide Protein
    Heading Accession and Version

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