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    LOC4325091 receptor protein-tyrosine kinase CEPR2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325091, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325091
    Gene description
    receptor protein-tyrosine kinase CEPR2
    Locus tag
    OSNPB_010878300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 40.1), flower buds (RPKM 25.7) and 5 other tissues See more
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    Genomic context

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    See LOC4325091 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38742213..38748064)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38112017..38117991)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325089 Neighboring gene uncharacterized LOC4325090 Neighboring gene amino acid permease 8 Neighboring gene amino acid permease 5 Neighboring gene transfer RNA valine (anticodon AAC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor protein-tyrosine kinase CEPR2
    Names
    Os01g0878300
    P0018C10.13-1
    P0018C10.13-2
    P0471B04.24-1
    P0471B04.24-2
    leucine-rich receptor protein kinase-like protein
    putative leucine-rich receptor-like protein kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38742213..38748064
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761376.3 → XP_015616862.1  receptor protein-tyrosine kinase CEPR2

      UniProtKB/TrEMBL
      A0A8J8YQD7, A2WXJ9, A3A063, Q0JH85, Q8L3T4
      Conserved Domains (2) summary
      PLN00113
      Location:9 → 945
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:95 → 117
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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