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    WRKY51 WRKY transcription factor WRKY51-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335388, updated on 16-Jul-2024

    Summary

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    Gene symbol
    WRKY51
    Gene description
    WRKY transcription factor WRKY51-like
    Locus tag
    OSNPB_040287400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsWRKY51; OsJ_14148
    Expression
    Broad expression in roots before flowering (RPKM 45.8), leaves after flowering (RPKM 29.3) and 6 other tissues See more
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    Genomic context

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    See WRKY51 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (12656262..12658152)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (12425566..12426997)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278355 Neighboring gene uncharacterized LOC136356175 Neighboring gene uncharacterized LOC107280612 Neighboring gene uncharacterized LOC136356176

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WRKY transcription factor WRKY51
    Names
    OSJNBa0065J03.18
    OSNPB_040287400
    Os04g0287400
    probable WRKY transcription factor 17
    wRKY transcription factor WRKY51

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402347.1 → NP_001389276.1  WRKY transcription factor WRKY51

      Status: VALIDATED

      Source sequence(s)
      AK121494, AP014960, CI245603, CI605296
      UniProtKB/Swiss-Prot
      B9FE97, Q0JEE2, Q6IEN1, Q7XVV4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      12656262..12658152
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0JEE2.1 GenPept UniProtKB/Swiss-Prot:Q0JEE2

    Gene LinkOut

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