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    LOC4333926 putative 3,4-dihydroxy-2-butanone kinase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333926, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4333926
    Gene description
    putative 3,4-dihydroxy-2-butanone kinase
    Locus tag
    OSNPB_030719300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ODAK1
    Expression
    Ubiquitous expression in flower buds (RPKM 26.0), flowers (RPKM 19.8) and 6 other tissues See more
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    Genomic context

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    See LOC4333926 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (29137675..29145553, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene 65-kDa microtubule-associated protein 6 Neighboring gene E3 SUMO-protein ligase SIZ2-like Neighboring gene monoacylglycerol lipase Neighboring gene uncharacterized LOC4333928

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glycerone kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycerol catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative 3,4-dihydroxy-2-butanone kinase
    Names
    Os03g0719300
    dihydroxyacetone kinase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      29137675..29145553 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777377.2 → XP_015632863.1  putative 3,4-dihydroxy-2-butanone kinase

      UniProtKB/TrEMBL
      A0A0P0W294, B8AQP5, Q0DP31, Q10DU4, Q6ASW3
      Conserved Domains (1) summary
      cl29418
      Location:6 → 570
      Dak2; DAK2 domain
    Nucleotide Protein
    Heading Accession and Version

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