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    LOC107276358 ETHYLENE INSENSITIVE 3-like 1 protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 107276358, updated on 1-Jul-2024

    Summary

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    Gene symbol
    LOC107276358
    Gene description
    ETHYLENE INSENSITIVE 3-like 1 protein
    Locus tag
    OSNPB_030324300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    EIL1; MHZ6; EIL1A; OsEIL1; OsEIL1a; OsJ_10672
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 262.2), roots after flowering (RPKM 251.5) and 6 other tissues See more
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    Genomic context

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    See LOC107276358 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (11774217..11778364)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene non-specific lipid transfer protein GPI-anchored 2 Neighboring gene ETHYLENE INSENSITIVE 3-like 1 protein Neighboring gene putative disease resistance protein RGA4 Neighboring gene probable arabinosyltransferase ARAD1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The activation of OsEIL1 on YUC8 transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development. Qin H, et al. PLoS Genet, 2017 Aug. PMID 28829777, Free PMC Article
    2. OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component. Mao C, et al. Plant Mol Biol, 2006 May. PMID 16786297
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ETHYLENE INSENSITIVE 3-like 1 protein; protein ETHYLENE-INSENSITIVE 3-like 1a
    Names
    EIN3-like protein 1
    EIN3-like protein 1a
    LOC_Os03g20790
    Protein ETHYLENE-INSENSITIVE 3-like 1a
    Protein MAO HUZI 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001405177.1 → NP_001392106.1  protein ETHYLENE-INSENSITIVE 3-like 1a

      Status: VALIDATED

      Source sequence(s)
      AK098987, AK101076, CB645953, CI181741
      UniProtKB/Swiss-Prot
      Q0DS96, Q10M41, Q3Y6P4
      UniProtKB/TrEMBL
      A2XG63

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      11774217..11778364
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774372.2 → XP_015629858.1  ETHYLENE INSENSITIVE 3-like 1 protein

      UniProtKB/TrEMBL
      Q10M41
      Conserved Domains (1) summary
      pfam04873
      Location:83 → 333
      EIN3; Ethylene insensitive 3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10M41.1 GenPept UniProtKB/Swiss-Prot:Q10M41

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