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    LOC4327564 leucine-rich repeat protein 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327564, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4327564
    Gene description
    leucine-rich repeat protein 1-like
    Locus tag
    OSNPB_010809300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FOR1; LRR1; OsLRR1
    Expression
    Ubiquitous expression in roots before flowering (RPKM 372.7), leaves after flowering (RPKM 197.0) and 6 other tissues See more
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    Genomic context

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    See LOC4327564 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (34985964..34989952)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (34379008..34383051)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327561 Neighboring gene uncharacterized LOC112937366 Neighboring gene uncharacterized LOC4327562 Neighboring gene uncharacterized LOC107281852 Neighboring gene L-2-hydroxyglutarate dehydrogenase, mitochondrial Neighboring gene probable U3 small nucleolar RNA-associated protein 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat protein 1
    Names
    LOC_Os01g59440
    OSNPB_010809300
    P0468B07.21
    floral organ regulator 1
    somatic embryogenesis receptor kinase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406364.1 → NP_001393293.1  leucine-rich repeat protein 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AK070798, CI761661
      UniProtKB/Swiss-Prot
      B8ABC2, Q5VQP7, Q84JK7
      UniProtKB/TrEMBL
      Q8GT94

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      34985964..34989952
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5VQP7.1 GenPept UniProtKB/Swiss-Prot:Q5VQP7

    Gene LinkOut

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