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    LOC4326936 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326936, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326936
    Gene description
    photosynthetic NDH subunit of subcomplex B 5, chloroplastic
    Locus tag
    OSNPB_010929100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 328.0), roots after flowering (RPKM 74.0) and 3 other tissues See more
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    Genomic context

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    See LOC4326936 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (41428436..41430796)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40785128..40786857)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene long chain base biosynthesis protein 2c Neighboring gene long chain base biosynthesis protein 2d-like Neighboring gene uncharacterized LOC4326967 Neighboring gene probable serine/threonine-protein kinase PBL7 Neighboring gene (+)-neomenthol dehydrogenase Neighboring gene transfer RNA leucine (anticodon AAG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    photosynthetic NDH subunit of subcomplex B 5, chloroplastic
    Names
    OSJNBa0052O12.18-2
    Os01g0929100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      41428436..41430796
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757977.3 → XP_015613463.1  photosynthetic NDH subunit of subcomplex B 5, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0VCF2, A0A979HKZ9, Q5JK31
    Nucleotide Protein
    Heading Accession and Version

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