U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4323843 protein DEHYDRATION-INDUCED 19 homolog 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323843, updated on 16-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4323843
    Gene description
    protein DEHYDRATION-INDUCED 19 homolog 5-like
    Locus tag
    OSNPB_010971100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    DI19-5; OsDi19-5; OsJ_004810; P0518C01.8
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4323843 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43498434..43500801)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42845769..42848121)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein MAIN-LIKE 2-like Neighboring gene pentatricopeptide repeat-containing protein At3g48250, chloroplastic Neighboring gene uncharacterized LOC4323844 Neighboring gene cysteine protease XCP2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings. Jing P, et al. Plant J, 2021 Feb. PMID 33179343
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings.
      Title: OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein DEHYDRATION-INDUCED 19 homolog 5
    Names
    LOC_Os01g73960
    putative drought-induced protein DI

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001372195.1 → NP_001359124.1  protein DEHYDRATION-INDUCED 19 homolog 5

      Status: VALIDATED

      Source sequence(s)
      AK069516, AU057067
      UniProtKB/Swiss-Prot
      B7EGH2, Q5JME8
      UniProtKB/TrEMBL
      A2WZJ8
      Conserved Domains (2) summary
      pfam05605
      Location:35 → 88
      zf-Di19; Drought induced 19 protein (Di19), zinc-binding
      pfam14571
      Location:131 → 201
      Di19_C; Stress-induced protein Di19, C-terminal

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      43498434..43500801
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5JME8.1 GenPept UniProtKB/Swiss-Prot:Q5JME8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials