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    LOC107275261 regulator of MON1-CCZ1 complex [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 107275261, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC107275261
    Gene description
    regulator of MON1-CCZ1 complex
    Locus tag
    OSNPB_100400900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 25.1), leaves after flowering (RPKM 22.9) and 6 other tissues See more
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    Genomic context

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    See LOC107275261 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (13543424..13551907)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene tyrosine decarboxylase 1 Neighboring gene phenylalanine--tRNA ligase alpha subunit, cytoplasmic Neighboring gene uncharacterized LOC4348568 Neighboring gene uncharacterized LOC4348569

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of autophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Mon1-Ccz1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    regulator of MON1-CCZ1 complex
    Names
    Os10g0400900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      13543424..13551907
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026020775.1 → XP_025876560.1  regulator of MON1-CCZ1 complex isoform X1

      UniProtKB/TrEMBL
      Q0IXT3, Q338I4
      Conserved Domains (1) summary
      pfam07035
      Location:547 → 704
      Mic1; Colon cancer-associated protein Mic1-like

    2. XM_026020776.1 → XP_025876561.1  regulator of MON1-CCZ1 complex isoform X1

      UniProtKB/TrEMBL
      Q0IXT3, Q338I4
      Conserved Domains (1) summary
      pfam07035
      Location:547 → 704
      Mic1; Colon cancer-associated protein Mic1-like

    3. XM_015759000.2 → XP_015614486.1  regulator of MON1-CCZ1 complex isoform X3

      UniProtKB/TrEMBL
      Q0IXT3, Q338I5
      Conserved Domains (1) summary
      pfam07035
      Location:547 → 688
      Mic1; Colon cancer-associated protein Mic1-like

    4. XM_026020778.1 → XP_025876563.1  regulator of MON1-CCZ1 complex isoform X2

      UniProtKB/TrEMBL
      Q0IXT3
      Conserved Domains (1) summary
      pfam07035
      Location:552 → 699
      Mic1; Colon cancer-associated protein Mic1-like
    Nucleotide Protein
    Heading Accession and Version

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