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    LOC4341706 uncharacterized LOC4341706 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341706, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4341706
    Gene description
    uncharacterized LOC4341706
    Locus tag
    OSNPB_060653800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0709F06.4
    Expression
    Ubiquitous expression in flower buds (RPKM 24.8), leaves after flowering (RPKM 22.0) and 6 other tissues See more
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    Genomic context

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    See LOC4341706 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (27643129..27645976, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (26778934..26781812, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene transcription factor IBH1-like 1 Neighboring gene uncharacterized LOC4341705 Neighboring gene protein transport protein Sec61 subunit gamma-like Neighboring gene ubiquitin carboxyl-terminal hydrolase 15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4341706
    Names
    OSJNBa0085J13.21
    Os06g0653800
    U5 small nuclear ribonucleoprotein 40 kDa protein
    WD domain, G-beta repeat domain-containing protein
    putative U5 snRNP-specific 40 kDa protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      27643129..27645976 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787600.3 → XP_015643086.1  uncharacterized protein LOC4341706

      UniProtKB/TrEMBL
      A2YFR3, B9FQ97, Q0DAG8, Q67WC9
      Conserved Domains (2) summary
      cd00200
      Location:49 → 340
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:57 → 94
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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