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    LOC4338931 uncharacterized LOC4338931 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338931, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338931
    Gene description
    uncharacterized LOC4338931
    Locus tag
    OSNPB_050443700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 17.1), flowers (RPKM 10.7) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (21819227..21822651, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (21708263..21711744, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene glucan endo-1,3-beta-glucosidase 14-like Neighboring gene ferredoxin-6, chloroplastic Neighboring gene cell division protein FtsZ homolog 2-2, chloroplastic Neighboring gene transcription factor TGAL5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi vesicle transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4338931
    Names
    Os05g0443700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      21819227..21822651 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783587.3 → XP_015639073.1  uncharacterized protein LOC4338931

      UniProtKB/TrEMBL
      A0A0P0WMW2, Q60DE9
      Conserved Domains (1) summary
      pfam09177
      Location:20 → 112
      Syntaxin-6_N; Syntaxin 6, N-terminal
    Nucleotide Protein
    Heading Accession and Version

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