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    LOC4330248 aquaporin PIP1-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330248, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4330248
    Gene description
    aquaporin PIP1-1-like
    Locus tag
    OSNPB_020666200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RWC1; PIP1A; RWC-1; PIP1-1; PIP1.1; OsPIP1;1; aquaporin; OsJ_007594; OJ1486_E07.10
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    Genomic context

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    See LOC4330248 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (27530762..27533811)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27044324..27047384)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 33 Neighboring gene uncharacterized LOC4330242 Neighboring gene U-box domain-containing protein 33 Neighboring gene mitogen-activated protein kinase kinase kinase YODA Neighboring gene cytochrome P450 86A2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning of a novel water channel from rice: its products expression in Xenopus oocytes and involvement in chilling tolerance. Li L, et al. Plant Sci, 2000 May 15. PMID 10725557
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables water channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to water deprivation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasmodesma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vacuole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aquaporin PIP1-1
    Names
    LOC_Os02g44630
    P0461B08.25
    Plasma membrane intrinsic protein 1-1
    Plasma membrane intrinsic protein 1a
    Water channel protein RWC1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401917.1 → NP_001388846.1  aquaporin PIP1-1

      Status: VALIDATED

      Source sequence(s)
      CF277043, KF737329
      UniProtKB/Swiss-Prot
      A3A9X2, O48664, O49913, Q0DYV2, Q6EU94
      UniProtKB/TrEMBL
      A0A1L2JKI3, A2X835, B7SDI4, I6QM82

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      27530762..27533811
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6EU94.1 GenPept UniProtKB/Swiss-Prot:Q6EU94

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.