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    LOC4336743 rho GTPase-activating protein 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336743, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336743
    Gene description
    rho GTPase-activating protein 5
    Locus tag
    OSNPB_040577200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4336743 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (29612170..29615658)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (29106032..29109572)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable inactive leucine-rich repeat receptor kinase XIAO Neighboring gene uncharacterized LOC4336742 Neighboring gene uncharacterized LOC4336745 Neighboring gene GDSL esterase/lipase At5g41890 Neighboring gene transcription repressor OFP1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rho GTPase-activating protein 5
    Names
    Os04g0577200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      29612170..29615658
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780046.2 → XP_015635532.1  rho GTPase-activating protein 5

      UniProtKB/TrEMBL
      A0A0P0WE61, B8ATE2, Q0JAU3, Q7XUH1
      Conserved Domains (2) summary
      smart00324
      Location:155 → 313
      RhoGAP; GTPase-activator protein for Rho-like GTPases
      cd00132
      Location:95 → 133
      CRIB; PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the ...
    Nucleotide Protein
    Heading Accession and Version

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