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    LOC4345940 probable WRKY transcription factor 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345940, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4345940
    Gene description
    probable WRKY transcription factor 2
    Locus tag
    OSNPB_080499300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    WRKY30; OJ1118_A06.2
    Expression
    Broad expression in flower buds (RPKM 22.5), mature seeds (RPKM 9.0) and 5 other tissues See more
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    Genomic context

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    See LOC4345940 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24791423..24795411, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24645859..24649903, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345938 Neighboring gene chloride channel protein CLC-f Neighboring gene uncharacterized LOC9267843 Neighboring gene uncharacterized LOC9270415

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A comprehensive expression analysis of the WRKY gene superfamily in rice plants during defense response. Ryu HS, et al. Plant Cell Rep, 2006 Aug. PMID 16528562
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable WRKY transcription factor 2
    Names
    Os08g0499300
    WRKY transcription factor 30
    putative WRKY DNA-binding protein
    transcription factor WRKY30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      24791423..24795411 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303417.1 → XP_066159514.1  probable WRKY transcription factor 2

      UniProtKB/TrEMBL
      A0A0P0XHP3, B8BC43, Q6ZKN0

    2. XM_015794679.3 → XP_015650165.1  probable WRKY transcription factor 2

      UniProtKB/TrEMBL
      A0A0P0XHP3, A3BUI2, B8BC43, Q6ZKN0
      Conserved Domains (1) summary
      smart00774
      Location:487 → 544
      WRKY; DNA binding domain

    3. XM_015794678.3 → XP_015650164.1  probable WRKY transcription factor 2

      UniProtKB/TrEMBL
      A0A0P0XHP3, A3BUI2, B8BC43, Q6ZKN0
      Conserved Domains (1) summary
      smart00774
      Location:487 → 544
      WRKY; DNA binding domain

    4. XM_066303416.1 → XP_066159513.1  probable WRKY transcription factor 2

      UniProtKB/TrEMBL
      A0A0P0XHP3, B8BC43, Q6ZKN0

    5. XM_015794673.3 → XP_015650159.1  probable WRKY transcription factor 2

      UniProtKB/TrEMBL
      A0A0P0XHP3, A3BUI2, B8BC43, Q6ZKN0
      Conserved Domains (1) summary
      smart00774
      Location:487 → 544
      WRKY; DNA binding domain

    6. XM_015794677.3 → XP_015650163.1  probable WRKY transcription factor 2

      UniProtKB/TrEMBL
      A0A0P0XHP3, A3BUI2, B8BC43, Q6ZKN0
      Conserved Domains (1) summary
      smart00774
      Location:487 → 544
      WRKY; DNA binding domain

    7. XM_015794676.3 → XP_015650162.1  probable WRKY transcription factor 2

      UniProtKB/TrEMBL
      A0A0P0XHP3, A3BUI2, B8BC43, Q6ZKN0
      Conserved Domains (1) summary
      smart00774
      Location:487 → 544
      WRKY; DNA binding domain
    Nucleotide Protein
    Heading Accession and Version

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