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    LOC9271765 uncharacterized LOC9271765 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271765, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9271765
    Gene description
    uncharacterized LOC9271765
    Locus tag
    OSNPB_070606500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 8.6), flowers (RPKM 8.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (25133454..25141340)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24908488..24916820)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357194 Neighboring gene cytosolic sulfotransferase 12 Neighboring gene nuclear transcription factor Y subunit B-10-like Neighboring gene probable carboxylesterase 18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC9271765
    Names
    ATP-dependent RNA helicase-like protein
    OSJNBa0072I06.9
    Os07g0606500
    P0493C06.24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      25133454..25141340
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792208.2 → XP_015647694.1  uncharacterized protein LOC9271765 isoform X1

      UniProtKB/TrEMBL
      B8B8B6
      Conserved Domains (1) summary
      cl28231
      Location:265 → 1030
      BRR2; Replicative superfamily II helicase [Replication, recombination and repair]

    2. XM_066312555.1 → XP_066168652.1  uncharacterized protein LOC9271765 isoform X4

      UniProtKB/TrEMBL
      B9FYB8

    3. XM_015792210.2 → XP_015647696.1  uncharacterized protein LOC9271765 isoform X2

      UniProtKB/TrEMBL
      B8B8B6
      Conserved Domains (4) summary
      cd00079
      Location:536 → 653
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      TIGR03817
      Location:265 → 1020
      DECH_helic; helicase/secretion neighborhood putative DEAH-box helicase
      pfam00270
      Location:302 → 471
      DEAD; DEAD/DEAH box helicase
      pfam09369
      Location:913 → 996
      DUF1998; Domain of unknown function (DUF1998)

    4. XM_015792212.2 → XP_015647698.1  uncharacterized protein LOC9271765 isoform X3

      UniProtKB/TrEMBL
      B8B8B6
      Conserved Domains (4) summary
      cd00079
      Location:536 → 642
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      TIGR03817
      Location:265 → 1019
      DECH_helic; helicase/secretion neighborhood putative DEAH-box helicase
      pfam00270
      Location:302 → 471
      DEAD; DEAD/DEAH box helicase
      pfam09369
      Location:912 → 995
      DUF1998; Domain of unknown function (DUF1998)
    Nucleotide Protein
    Heading Accession and Version

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